You might have noticed a process called mrt.exe running in your Task Manager, possibly consuming a significant amount of CPU resources, and wondered if it is safe. Don't worry, this is a common scenario for many Windows users. In most cases, this file is completely harmless and is actually working to protect your system. However, distinguishing the legitimate file from potential malware that might be mimicking it is crucial for your digital security. This guide will help you verify the safety of this process and manage its performance impact on your PC.
What Is MRT.exe in Windows?
The Malicious Software Removal Tool, abbreviated as MRT, is an official security utility developed by Microsoft. It is designed to run in the background, typically once a month, to scan your computer for specific, prevalent threats like the Blaster worm, Sasser, and Mydoom.
Unlike your standard antivirus software, mrt.exe does not provide real-time protection. It does not monitor your emails or prevent files from being downloaded. Instead, it acts as a post-infection cleanup crew. When Windows Update downloads the latest version of the tool, it automatically executes to check if your system is already infected by a specific list of known malicious software. If it finds anything, it removes the threat and generates a report. If it finds nothing, it quietly deletes itself from the running processes until the next update.
Is MRT.exe Safe or a Virus? (How to Check)
While the genuine mrt.exe is a vital part of Windows security, cybercriminals often name their viruses or trojans with identical names to hide in plain sight. You must verify that the process running on your computer is the legitimate Microsoft tool and not an imposter.

Check the File Location
The most reliable way to spot a fake file is by checking its location. The authentic Microsoft tool always resides in the System32 folder.
To verify this, open your Task Manager (Ctrl + Shift + Esc), find the mrt.exe process, right-click on it, and select Open file location.
If the file is located in C:\Windows\System32, it is highly likely to be legitimate. However, if you find this file in any other folder, such as C:\Users or C:\Temp, you are likely dealing with a malicious file.
Verify the Digital Signature
For absolute certainty, you should check the digital signature of the file.
Right-click the mrt.exe file you located in the System32 folder. Select Properties and navigate to the Digital Signatures tab. Look for Microsoft Windows in the signature list. Select the signature and click Details to ensure it says This digital signature is OK.
If you suspect your system is compromised or if the file location looks suspicious, it is a smart move to boot Windows in Safe Mode and run a full antivirus scan. This isolates the operating system and prevents malware from interfering with the removal process.
Why Is MRT.exe Using High CPU?
Seeing mrt.exe use 80% or even 100% of your CPU can be alarming, but it is usually temporary. This high usage occurs because the tool is actively scanning your hard drive for infections. Since it scans thousands of files, it requires significant processing power, especially on older machines or computers with traditional hard drives (HDD) rather than SSDs.
This spike in resource usage typically happens shortly after a Windows Update. The tool is programmed to run, scan, and then terminate. If the high CPU usage persists for days, however, it might indicate that the tool is stuck on a specific file or conflicting with another security program.
How to Fix MRT.exe High CPU Usage
If the process is slowing down your workflow, you have a few options to manage it without compromising your security.
Let the Scan Finish
The safest approach is simply to wait. The scan usually takes a few minutes to an hour, depending on your disk speed and the number of files. Once it finishes, the process will close automatically, and your CPU usage will return to normal.

Use the Force Command to Clear Tasks
Sometimes the tool gets stuck in a loop. You can manually force it to run a full scan and clear its queue, which often resolves the high usage glitch.
Press Win + R on your keyboard. Type mrt.exe /full and press Enter.
This forces the tool to perform a comprehensive scan immediately. While this will use high CPU for the duration of the scan, it often clears out the pending tasks that were causing the background process to hang.
End the Task
If you need your computer's performance immediately for a game or heavy work, you can safely stop the process.
Open Task Manager. Right-click mrt.exe or Microsoft Windows Malicious Software Removal Tool. Select End Task.
Keep in mind that this stops the current scan. The tool may try to run again the next time you restart your computer or when the next Windows Update triggers it.
Can I Delete MRT.exe?
Technically, yes, you can delete the file, but it is not recommended. The file is harmless and serves as a monthly second opinion on your system's health. Deleting it does not permanently solve the issue because Windows Update will simply download it again next month.
If you are adamant about preventing it from running, a better method is to disable the task in the Task Scheduler rather than deleting the file, but for the vast majority of users, letting it run its course is the best practice for a healthy system.
How to Run MRT Manually (Quick Scan)
You do not have to wait for Windows Update to use this tool. If you suspect you might have been infected by a common worm or trojan, you can trigger a scan manually at any time.
Press Win + R to open the Run dialog. Type mrt and hit Enter. Click Next in the window that appears. Choose Quick scan, Full scan, or Customized scan depending on your needs.
This manual check is a great first step if your PC is behaving strangely, but remember that it is not a substitute for a dedicated, real-time antivirus solution.
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